What do you need
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• A decrypted 3DS ROM;
• This tool;

How to extract ROM FS
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1. Open HackingToolkit.exe in the HackingTool folder
2. As soon it is opened a black window, type D and click Enter
3. Type the exact name of the 3DS ROM from which you want to extract the FS*
4. Let it complete the extraction.
5. Immediately after the extraction, you'll be asked if you want to decompress the file "code.bin", type N and click Enter.

Now, in the HackingTool folder, you should have new folders and files. Well, the extraction is finished .

*The 3DS ROM needs to be in the folder HackingTool, together HackingToolkit.exe. Also don't forget to type the file extension (.3DS)!

Tips
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Instead of writing the exact name of the ROM, you can just drag the ROM in the black window.
Also, instead of decrypt the ROM yourself, try to search an already decrypted ROM on Google, maybe you'll find one!
The ROM must not have spaces, or it can cause problems.